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RCyjs

This is the development version of RCyjs; for the stable release version, see RCyjs.

Display and manipulate graphs in cytoscape.js


Bioconductor version: Development (3.19)

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")
RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js HTML R Script
Reference Manual PDF
README Text
NEWS Text
LICENSE Text

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 2.25.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), BrowserViz(>= 2.7.18), graph(>= 1.56.0)
Imports methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils
System Requirements
URL
See More
Suggests RUnit, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RCyjs_2.25.0.tar.gz
Windows Binary RCyjs_2.25.0.zip
macOS Binary (x86_64) RCyjs_2.25.0.tgz
macOS Binary (arm64) RCyjs_2.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs
Bioc Package Browser https://code.bioconductor.org/browse/RCyjs/
Package Short Url https://bioconductor.org/packages/RCyjs/
Package Downloads Report Download Stats