NanoStringNCTools
This is the development version of NanoStringNCTools; for the stable release version, see NanoStringNCTools.
NanoString nCounter Tools
Bioconductor version: Development (3.20)
Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.
Author: Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]
Maintainer: Maddy Griswold <mgriswold at nanostring.com>
citation("NanoStringNCTools")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("NanoStringNCTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringNCTools")
Introduction to the NanoStringRCCSet Class | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray |
Version | 1.13.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | MIT |
Depends | R (>= 3.6), Biobase, S4Vectors, ggplot2 |
Imports | BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils |
System Requirements | |
URL |
See More
Suggests | biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf |
Linking To | |
Enhances | |
Depends On Me | GeomxTools, GeoMxWorkflows |
Imports Me | GeoDiff |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | NanoStringNCTools_1.13.0.tar.gz |
Windows Binary | NanoStringNCTools_1.13.0.zip (64-bit only) |
macOS Binary (x86_64) | NanoStringNCTools_1.13.0.tgz |
macOS Binary (arm64) | NanoStringNCTools_1.13.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NanoStringNCTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NanoStringNCTools |
Bioc Package Browser | https://code.bioconductor.org/browse/NanoStringNCTools/ |
Package Short Url | https://bioconductor.org/packages/NanoStringNCTools/ |
Package Downloads Report | Download Stats |