MsBackendMassbank

DOI: 10.18129/B9.bioc.MsBackendMassbank    

This is the development version of MsBackendMassbank; for the stable release version, see MsBackendMassbank.

Mass Spectrometry Data Backend for MassBank record Files

Bioconductor version: Development (3.14)

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] , Johannes Rainer [aut] , Michael Stravs [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMassbank")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendMassbank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMassbank")

 

HTML R Script Description and usage of MsBackendMassbank
PDF   Reference Manual

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software
Version 1.1.3
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License Artistic-2.0
Depends R (>= 4.0), Spectra(>= 1.0)
Imports BiocParallel, S4Vectors, IRanges, methods, ProtGenerics, MsCoreUtils, DBI, utils
LinkingTo
Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), RSQLite, rmarkdown
SystemRequirements
Enhances
URL https://github.com/RforMassSpectrometry/MsBackendMassbank
BugReports https://github.com/RforMassSpectrometry/MsBackendMassbank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMassbank_1.1.3.tar.gz
Windows Binary MsBackendMassbank_1.1.3.zip
macOS 10.13 (High Sierra) MsBackendMassbank_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendMassbank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMassbank
Package Short Url https://bioconductor.org/packages/MsBackendMassbank/
Package Downloads Report Download Stats

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