IdeoViz

DOI: 10.18129/B9.bioc.IdeoViz    

This is the development version of IdeoViz; for the stable release version, see IdeoViz.

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: Development (3.15)

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Citation (from within R, enter citation("IdeoViz")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IdeoViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IdeoViz")

 

PDF R Script IdeoViz: a package for plotting simple data along ideograms
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Microarray, Software, Visualization
Version 1.31.1
In Bioconductor since BioC 3.0 (R-3.1) (7 years)
License GPL-2
Depends R (>= 3.5.0), Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IdeoViz_1.31.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra) IdeoViz_1.31.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/IdeoViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IdeoViz
Package Short Url https://bioconductor.org/packages/IdeoViz/
Package Downloads Report Download Stats

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