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IVAS

This is the development version of IVAS; for the stable release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing


Bioconductor version: Development (3.19)

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")
IVAS : Identification of genetic Variants affecting Alternative Splicing PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 2.23.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IVAS_2.23.0.tar.gz
Windows Binary IVAS_2.23.0.zip
macOS Binary (x86_64) IVAS_2.23.0.tgz
macOS Binary (arm64) IVAS_2.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IVAS
Bioc Package Browser https://code.bioconductor.org/browse/IVAS/
Package Short Url https://bioconductor.org/packages/IVAS/
Package Downloads Report Download Stats