Registration and Call for Abstracts Open for Bioc2024

GEOexplorer

This is the development version of GEOexplorer; for the stable release version, see GEOexplorer.

GEOexplorer: a webserver for gene expression analysis and visualisation


Bioconductor version: Development (3.19)

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Author: Guy Hunt [aut, cre] , Rafael Henkin [ctb, ths] , Alfredo Iacoangeli [ctb, ths] , Fabrizio Smeraldi [ctb, ths] , Michael Barnes [ctb, ths]

Maintainer: Guy Hunt <guy.hunt at kcl.ac.uk>

Citation (from within R, enter citation("GEOexplorer")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GEOexplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.9.1
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3
Depends shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0)
Imports DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car
System Requirements
URL https://github.com/guypwhunt/GEOexplorer/
Bug Reports https://github.com/guypwhunt/GEOexplorer/issues
See More
Suggests rmarkdown, usethis, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64) GEOexplorer_1.9.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GEOexplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GEOexplorer
Bioc Package Browser https://code.bioconductor.org/browse/GEOexplorer/
Package Short Url https://bioconductor.org/packages/GEOexplorer/
Package Downloads Report Download Stats