DExMA

DOI: 10.18129/B9.bioc.DExMA    

This is the development version of DExMA; for the stable release version, see DExMA.

Differential Expression Meta-Analysis

Bioconductor version: Development (3.15)

performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]

Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>

Citation (from within R, enter citation("DExMA")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DExMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DExMA")

 

PDF R Script Differential Expression Meta-Analysis with DExMA package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod
Version 1.3.1
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License GPL-2
Depends R (>= 4.1), DExMAdata
Imports Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct
LinkingTo
Suggests BiocStyle, qpdf, BiocGenerics, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DExMA_1.3.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra) DExMA_1.3.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DExMA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DExMA
Package Short Url https://bioconductor.org/packages/DExMA/
Package Downloads Report Download Stats

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