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CTdata

This is the development version of CTdata; for the stable release version, see CTdata.

Data companion to CTexploreR


Bioconductor version: Development (3.19)

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] , Julie Devis [aut] , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CTdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CTdata")
Cancer Testis Datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.2)
Imports ExperimentHub, utils
System Requirements
URL
Bug Reports https://github.com/UCLouvain-CBIO/CTdata/issues
See More
Suggests testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment
Linking To
Enhances
Depends On Me CTexploreR
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTdata_1.3.0.tar.gz
Windows Binary CTdata_1.3.0.zip
macOS Binary (x86_64) CTdata_1.3.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser https://code.bioconductor.org/browse/CTdata/
Package Short Url https://bioconductor.org/packages/CTdata/
Package Downloads Report Download Stats