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CHRONOS

This is the development version of CHRONOS; for the stable release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis


Bioconductor version: Development (3.19)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")
CHRONOS PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 3.5)
Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava
System Requirements Java version >= 1.7, Pandoc
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Suggests RUnit, BiocGenerics, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHRONOS_1.31.0.tar.gz
Windows Binary CHRONOS_1.31.0.zip (64-bit only)
macOS Binary (x86_64) CHRONOS_1.31.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHRONOS
Bioc Package Browser https://code.bioconductor.org/browse/CHRONOS/
Package Short Url https://bioconductor.org/packages/CHRONOS/
Package Downloads Report Download Stats