BioTIP

DOI: 10.18129/B9.bioc.BioTIP  

This is the development version of BioTIP; for the stable release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Development (3.18)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription
Version	1.15.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	GPL-2
Depends	R (>= 3.6)
Imports	igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
LinkingTo
Suggests	knitr, markdown, base, rmarkdown, ggplot2
SystemRequirements
Enhances
URL	https://github.com/xyang2uchicago/BioTIP
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	BioTIP_1.15.0.zip
macOS Binary (x86_64)	BioTIP_1.15.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser	https://code.bioconductor.org/browse/BioTIP/
Package Short Url	https://bioconductor.org/packages/BioTIP/
Package Downloads Report	Download Stats