AnnotationHubData

DOI: 10.18129/B9.bioc.AnnotationHubData    

This is the development version of AnnotationHubData; for the stable release version, see AnnotationHubData.

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Development (3.17)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, Software
Version	1.29.0
In Bioconductor since	BioC 3.2 (R-3.2) (7 years)
License	Artistic-2.0
Depends	R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.15.15)
Imports	GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, BiocCheck, graph, AnnotationDbi, Biobase, Biostrings, DBI, GenomeInfoDb(>= 1.15.4), OrganismDbi, RSQLite, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
LinkingTo
Suggests	RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
SystemRequirements
Enhances
URL
Depends On Me	ExperimentHubData
Imports Me
Suggests Me	HubPub
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AnnotationHubData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnnotationHubData
Package Short Url	https://bioconductor.org/packages/AnnotationHubData/
Package Downloads Report	Download Stats