AnnotationHubData

DOI: 10.18129/B9.bioc.AnnotationHubData    

This is the development version of AnnotationHubData; for the stable release version, see AnnotationHubData.

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Development (3.17)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHubData")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, Software
Version 1.29.0
In Bioconductor since BioC 3.2 (R-3.2) (7 years)
License Artistic-2.0
Depends R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.15.15)
Imports GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, BiocCheck, graph, AnnotationDbi, Biobase, Biostrings, DBI, GenomeInfoDb(>= 1.15.4), OrganismDbi, RSQLite, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
LinkingTo
Suggests RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
SystemRequirements
Enhances
URL
Depends On Me ExperimentHubData
Imports Me
Suggests Me HubPub
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/AnnotationHubData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnnotationHubData
Package Short Url https://bioconductor.org/packages/AnnotationHubData/
Package Downloads Report Download Stats

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