ASpli

DOI: 10.18129/B9.bioc.ASpli  

This is the development version of ASpli; for the stable release version, see ASpli.

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: Development (3.18)

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version	2.11.0
In Bioconductor since	BioC 3.4 (R-3.3) (6.5 years)
License	GPL
Depends	methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports	GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)	ASpli_2.11.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpli
Bioc Package Browser	https://code.bioconductor.org/browse/ASpli/
Package Short Url	https://bioconductor.org/packages/ASpli/
Package Downloads Report	Download Stats