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simpIntLists

The package contains BioGRID interactions for various organisms in a simple format


Bioconductor version: Release (3.18)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("simpIntLists")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("simpIntLists")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")
simpIntLists PDF R Script
Reference Manual PDF

Details

biocViews Arabidopsis_thaliana_Data, ExperimentData
Version 1.38.0
License GPL (>= 2)
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Depends On Me ibh
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package simpIntLists_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/simpIntLists
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/simpIntLists
Package Short Url https://bioconductor.org/packages/simpIntLists/
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