Welcome to the new bioconductor.org!

orthosData

Data for the orthos package


Bioconductor version: Release (3.18)

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Author: Panagiotis Papasaikas [aut, cre] , Charlotte Soneson [aut] , Michael Stadler [aut] , Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>

Citation (from within R, enter citation("orthosData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("orthosData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("orthosData")
1. Introduction to orthos HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, RNASeqData
Version 1.0.0
License MIT + file LICENSE
Depends
Imports AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment
System Requirements
URL https://github.com/fmicompbio/orthosData
Bug Reports https://github.com/fmicompbio/orthosData/issues
See More
Suggests BiocStyle, ggplot2, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me orthos
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package orthosData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/orthosData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/orthosData
Package Short Url https://bioconductor.org/packages/orthosData/
Package Downloads Report Download Stats