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Various Mass Spectrometry raw data example files

Bioconductor version: Release (3.18)

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews ExperimentData, MassSpectrometryData
Version 0.42.0
License GPL (>= 2)
Depends R (>= 3.5.0)
System Requirements
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Suggests xcms, mzR, MSnbase
Linking To
Depends On Me
Imports Me MsQuality
Suggests Me IPO, MetaboAnnotation, MobilityTransformR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, RforProteomics, Spectra, TargetDecoy, xcms
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Source Package msdata_0.42.0.tar.gz
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Package Short Url https://bioconductor.org/packages/msdata/
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