TENxBUSData
Single cell dataset from 10x in BUS format
Bioconductor version: Release (3.19)
Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.
Author: Lambda Moses [aut, cre]
Maintainer: Lambda Moses <dlu2 at caltech.edu>
Citation (from within R, enter
citation("TENxBUSData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENxBUSData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxBUSData")
Downloading BUS data | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData |
Version | 1.18.0 |
License | BSD_2_clause + file LICENSE |
Depends | |
Imports | ExperimentHub, AnnotationHub, utils, BiocGenerics |
System Requirements | |
URL | https://github.com/BUStools/TENxBUSData |
Bug Reports | https://github.com/BUStools/TENxBUSData/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | BUSpaRse |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TENxBUSData_1.18.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/TENxBUSData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxBUSData |
Package Short Url | https://bioconductor.org/packages/TENxBUSData/ |
Package Downloads Report | Download Stats |