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RTCGA.mutations

Mutations datasets from The Cancer Genome Atlas Project


Bioconductor version: Release (3.18)

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.mutations")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.mutations")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.mutations")
Using RTCGA to download mutations data as included in RTCGA.mutations HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation Data, ExperimentData
Version 20151101.32.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
System Requirements
URL
Bug Reports https://github.com/RTCGA/RTCGA/issues
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.mutations_20151101.32.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.mutations
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.mutations
Package Short Url https://bioconductor.org/packages/RTCGA.mutations/
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