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GSE103322

GEO accession data GSE103322 as a SingleCellExperiment


Bioconductor version: Release (3.18)

Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.

Author: Mariano Alvarez [aut, cre]

Maintainer: Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("GSE103322")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSE103322")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE103322")
scRNASeq HNSC data using Bioconductor's ExperimentHub HTML R Script
Reference Manual PDF

Details

biocViews CancerData, DNASeqData, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, Homo_sapiens_Data, RNASeqData, SingleCellData
Version 1.8.0
License Artistic-2.0
Depends Biobase, GEOquery
Imports
System Requirements
URL
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Suggests ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSE103322_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GSE103322
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSE103322
Package Short Url https://bioconductor.org/packages/GSE103322/
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