BSgenome.Mmusculus.UCSC.mm10.masked

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.masked.

Full masked genome sequences for Mus musculus (UCSC genome mm10, based on GRCm38.p6)


Bioconductor version: 3.18

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm10, based on GRCm38.p6) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10.masked")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10.masked")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Mus_musculus
Version 1.4.3
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome(>= 1.60.0), BSgenome.Mmusculus.UCSC.mm10
Imports BSgenome, BSgenome.Mmusculus.UCSC.mm10
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me podkat, r3Cseq, spiky
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm10.masked_1.4.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10.masked/
Package Downloads Report Download Stats