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tRNA

Analyzing tRNA sequences and structures


Bioconductor version: Release (3.18)

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Author: Felix GM Ernst [aut, cre]

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNA")
tRNA HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Software, Visualization
Version 1.20.1
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges, Structstrings
Imports stringr, S4Vectors, methods, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales
System Requirements
URL
Bug Reports https://github.com/FelixErnst/tRNA/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
Linking To
Enhances
Depends On Me tRNAdbImport, tRNAscanImport
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNA_1.20.1.tar.gz
Windows Binary tRNA_1.20.1.zip
macOS Binary (x86_64) tRNA_1.20.1.tgz
macOS Binary (arm64) tRNA_1.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNA
Bioc Package Browser https://code.bioconductor.org/browse/tRNA/
Package Short Url https://bioconductor.org/packages/tRNA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive