scTGIF

Cell type annotation for unannotated single-cell RNA-Seq data


Bioconductor version: Release (3.20)

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("scTGIF")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTGIF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTGIF")
scTGIF HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.20.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
System Requirements
URL
See More
Suggests testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me scTensor
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTGIF_1.20.0.tar.gz
Windows Binary (x86_64) scTGIF_1.20.0.zip
macOS Binary (x86_64) scTGIF_1.20.0.tgz
macOS Binary (arm64) scTGIF_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTGIF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTGIF
Bioc Package Browser https://code.bioconductor.org/browse/scTGIF/
Package Short Url https://bioconductor.org/packages/scTGIF/
Package Downloads Report Download Stats