scTGIF
Cell type annotation for unannotated single-cell RNA-Seq data
Bioconductor version: Release (3.20)
scTGIF connects the cells and the related gene functions without cell type label.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("scTGIF")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTGIF")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTGIF")
scTGIF | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DimensionReduction, GeneExpression, QualityControl, SingleCell, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6.0) |
Imports | GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph |
System Requirements | |
URL |
See More
Suggests | testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | scTensor |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | scTGIF_1.20.0.tar.gz |
Windows Binary (x86_64) | scTGIF_1.20.0.zip |
macOS Binary (x86_64) | scTGIF_1.20.0.tgz |
macOS Binary (arm64) | scTGIF_1.19.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/scTGIF |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTGIF |
Bioc Package Browser | https://code.bioconductor.org/browse/scTGIF/ |
Package Short Url | https://bioconductor.org/packages/scTGIF/ |
Package Downloads Report | Download Stats |