rrvgo

DOI: 10.18129/B9.bioc.rrvgo    

Reduce + Visualize GO

Bioconductor version: Release (3.11)

Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.

Author: Sergi Sayols

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>

Citation (from within R, enter citation("rrvgo")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rrvgo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rrvgo")

 

HTML R Script Using rrvgo
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, GO, Network, Pathways, Software
Version 1.0.2
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
SystemRequirements
Enhances
URL https://www.bioconductor.org/packages/rrvgo https://ssayols.github.io/rrvgo/index.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rrvgo_1.0.2.tar.gz
Windows Binary rrvgo_1.0.2.zip
macOS 10.13 (High Sierra) rrvgo_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/rrvgo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rrvgo
Package Short Url https://bioconductor.org/packages/rrvgo/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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