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rBiopaxParser

Parses BioPax files and represents them in R


Bioconductor version: Release (3.18)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")
rBiopaxParser Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Software
Version 2.42.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL (>= 2)
Depends R (>= 4.0), data.table
Imports XML
System Requirements
URL https://github.com/frankkramer-lab/rBiopaxParser
See More
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
Linking To
Enhances
Depends On Me
Imports Me pwOmics
Suggests Me AnnotationHub, NetPathMiner
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rBiopaxParser_2.42.0.tar.gz
Windows Binary rBiopaxParser_2.42.0.zip
macOS Binary (x86_64) rBiopaxParser_2.42.0.tgz
macOS Binary (arm64) rBiopaxParser_2.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBiopaxParser
Bioc Package Browser https://code.bioconductor.org/browse/rBiopaxParser/
Package Short Url https://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report Download Stats