rBiopaxParser
Parses BioPax files and represents them in R
Bioconductor version: Release (3.19)
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
Author: Frank Kramer
Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>
Citation (from within R, enter
citation("rBiopaxParser")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rBiopaxParser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rBiopaxParser")
rBiopaxParser Vignette | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, Software |
Version | 2.44.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | GPL (>= 2) |
Depends | R (>= 4.0), data.table |
Imports | XML |
System Requirements | |
URL | https://github.com/frankkramer-lab/rBiopaxParser |
See More
Suggests | Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | pwOmics |
Suggests Me | AnnotationHub, NetPathMiner |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rBiopaxParser_2.44.0.tar.gz |
Windows Binary | rBiopaxParser_2.44.0.zip (64-bit only) |
macOS Binary (x86_64) | rBiopaxParser_2.44.0.tgz |
macOS Binary (arm64) | rBiopaxParser_2.44.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rBiopaxParser |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rBiopaxParser |
Bioc Package Browser | https://code.bioconductor.org/browse/rBiopaxParser/ |
Package Short Url | https://bioconductor.org/packages/rBiopaxParser/ |
Package Downloads Report | Download Stats |