pdInfoBuilder
Platform Design Information Package Builder
Bioconductor version: Release (3.20)
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <benilton at unicamp.br>
citation("pdInfoBuilder")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pdInfoBuilder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")
Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | ||
PDInfo Package Building Affymetrix Mapping Chips | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Infrastructure, Software |
Version | 1.70.0 |
In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5) |
Imports | Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22) |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | maqcExpression4plex, aroma.affymetrix, maGUI |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | pdInfoBuilder_1.70.0.tar.gz |
Windows Binary (x86_64) | pdInfoBuilder_1.70.0.zip |
macOS Binary (x86_64) | pdInfoBuilder_1.70.0.tgz |
macOS Binary (arm64) | pdInfoBuilder_1.69.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pdInfoBuilder |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pdInfoBuilder |
Bioc Package Browser | https://code.bioconductor.org/browse/pdInfoBuilder/ |
Package Short Url | https://bioconductor.org/packages/pdInfoBuilder/ |
Package Downloads Report | Download Stats |