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netboost

Network Analysis Supported by Boosting


Bioconductor version: Release (3.18)

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Citation (from within R, enter citation("netboost")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")
The Netboost users guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics
Version 2.10.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, BiocStyle, R.utils
System Requirements GNU make, Bash, Perl, Gzip
URL https://bioconductor.org/packages/release/bioc/html/netboost.html
Bug Reports pascal.schlosser@uniklinik-freiburg.de
See More
Suggests knitr, rmarkdown
Linking To Rcpp, RcppParallel
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netboost_2.10.0.tar.gz
Windows Binary
macOS Binary (x86_64) netboost_2.10.0.tgz
macOS Binary (arm64) netboost_2.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netboost
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netboost
Bioc Package Browser https://code.bioconductor.org/browse/netboost/
Package Short Url https://bioconductor.org/packages/netboost/
Package Downloads Report Download Stats