moanin
An R Package for Time Course RNASeq Data Analysis
Bioconductor version: Release (3.20)
Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.
Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]
Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>
citation("moanin")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("moanin")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("moanin")
The Moanin Package | HTML | R Script |
Reference Manual | ||
README | Text | |
LICENSE | Text |
Details
biocViews | Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse |
Version | 1.14.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | BSD 3-clause License + file LICENSE |
Depends | R (>= 4.0), SummarizedExperiment, topGO, stats |
Imports | S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats |
System Requirements | |
URL |
See More
Suggests | testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, markdown, covr, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | moanin_1.14.0.tar.gz |
Windows Binary (x86_64) | moanin_1.14.0.zip |
macOS Binary (x86_64) | moanin_1.14.0.tgz |
macOS Binary (arm64) | moanin_1.13.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/moanin |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/moanin |
Bioc Package Browser | https://code.bioconductor.org/browse/moanin/ |
Package Short Url | https://bioconductor.org/packages/moanin/ |
Package Downloads Report | Download Stats |