hmdbQuery
utilities for exploration of human metabolome database
Bioconductor version: Release (3.20)
Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("hmdbQuery")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hmdbQuery")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hmdbQuery")| hmdbQuery: working with Human Metabolome Database (hmdb.ca) | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure, Metabolomics, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5), XML |
| Imports | S4Vectors, methods, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, annotate, gwascat, testthat, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hmdbQuery_1.26.0.tar.gz |
| Windows Binary (x86_64) | hmdbQuery_1.26.0.zip |
| macOS Binary (x86_64) | hmdbQuery_1.26.0.tgz |
| macOS Binary (arm64) | hmdbQuery_1.25.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hmdbQuery |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hmdbQuery |
| Bioc Package Browser | https://code.bioconductor.org/browse/hmdbQuery/ |
| Package Short Url | https://bioconductor.org/packages/hmdbQuery/ |
| Package Downloads Report | Download Stats |