gcatest

DOI: 10.18129/B9.bioc.gcatest  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Genotype Conditional Association TEST

Bioconductor version: Release (3.17)

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcatest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version	1.30.0
In Bioconductor since	BioC 3.2 (R-3.2) (7.5 years)
License	GPL-3
Depends	R (>= 3.2)
Imports	lfa
LinkingTo
Suggests	knitr, ggplot2
SystemRequirements
Enhances
URL	https://github.com/StoreyLab/gcatest
BugReports	https://github.com/StoreyLab/gcatest/issues
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gcatest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gcatest
Package Short Url	https://bioconductor.org/packages/gcatest/
Package Downloads Report	Download Stats