gcatest

DOI: 10.18129/B9.bioc.gcatest  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Genotype Conditional Association TEST

Bioconductor version: Release (3.17)

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcatest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 3.2)
Imports lfa
LinkingTo
Suggests knitr, ggplot2
SystemRequirements
Enhances
URL https://github.com/StoreyLab/gcatest
BugReports https://github.com/StoreyLab/gcatest/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/gcatest
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gcatest
Package Short Url https://bioconductor.org/packages/gcatest/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: