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A package with helper functions for processing drug response data

Bioconductor version: Release (3.18)

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at>

Citation (from within R, enter citation("gDRutils")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

gDRutils HTML R Script
Reference Manual PDF


biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (0.5 years)
License Artistic-2.0
Depends R (>= 4.2)
Imports BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment
System Requirements
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Suggests BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml
Linking To
Depends On Me gDR
Imports Me gDRcore, gDRimport
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package gDRutils_1.0.0.tar.gz
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macOS Binary (x86_64) gDRutils_1.0.0.tgz
macOS Binary (arm64) gDRutils_1.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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