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flowCore

flowCore: Basic structures for flow cytometry data


Bioconductor version: Release (3.18)

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]

Maintainer: Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("flowCore")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")
Basic Functions for Flow Cytometry Data PDF R Script
fcs3.html HTML
hyperlog.notice.html HTML
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software
Version 2.14.1
In Bioconductor since BioC 2.0 (R-2.5) (17 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.13.1), S4Vectors
System Requirements GNU make, C++11
URL
See More
Suggests Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
Linking To cpp11, BH (>= 1.81.0.0), cytolib, RProtoBufLib
Enhances
Depends On Me flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, infinityFlow, ncdfFlow
Imports Me CATALYST, cmapR, CONFESS, cyanoFilter, cydar, CytoDx, cytofQC, cytoMEM, CytoML, CytoPipeline, CytoPipelineGUI, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowGate, flowMeans, flowMerge, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowViz, flowWorkspace, GateFinder, ImmuneSpaceR, MetaCyto, ncdfFlow, oneSENSE, openCyto, PeacoQC, scDataviz, scifer, Sconify
Suggests Me COMPASS, flowPloidyData
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCore_2.14.1.tar.gz
Windows Binary flowCore_2.14.1.zip
macOS Binary (x86_64) flowCore_2.14.1.tgz
macOS Binary (arm64) flowCore_2.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCore
Bioc Package Browser https://code.bioconductor.org/browse/flowCore/
Package Short Url https://bioconductor.org/packages/flowCore/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive