dagLogo
dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
Bioconductor version: Release (3.19)
Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
Citation (from within R, enter
citation("dagLogo")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dagLogo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dagLogo")
dagLogo Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | SequenceMatching, Software, Visualization |
Version | 1.42.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL (>=2) |
Depends | R (>= 3.0.1), methods, grid |
Imports | pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack, httr |
System Requirements | |
URL |
See More
Suggests | XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | dagLogo_1.42.0.tar.gz |
Windows Binary | dagLogo_1.42.0.zip |
macOS Binary (x86_64) | dagLogo_1.42.0.tgz |
macOS Binary (arm64) | dagLogo_1.42.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/dagLogo |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dagLogo |
Bioc Package Browser | https://code.bioconductor.org/browse/dagLogo/ |
Package Short Url | https://bioconductor.org/packages/dagLogo/ |
Package Downloads Report | Download Stats |