Welcome to the new bioconductor.org!

breakpointR

Find breakpoints in Strand-seq data


Bioconductor version: Release (3.18)

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

Author: David Porubsky, Ashley Sanders, Aaron Taudt

Maintainer: David Porubsky <david.porubsky at gmail.com>

Citation (from within R, enter citation("breakpointR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("breakpointR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("breakpointR")
How to use breakpointR PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Coverage, DNASeq, Sequencing, SingleCell, Software
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License file LICENSE
Depends R (>= 3.5), GenomicRanges, cowplot, breakpointRdata
Imports methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach
System Requirements
URL https://github.com/daewoooo/BreakPointR
See More
Suggests knitr, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package breakpointR_1.20.0.tar.gz
Windows Binary breakpointR_1.20.0.zip
macOS Binary (x86_64) breakpointR_1.20.0.tgz
macOS Binary (arm64) breakpointR_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/breakpointR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/breakpointR
Bioc Package Browser https://code.bioconductor.org/browse/breakpointR/
Package Short Url https://bioconductor.org/packages/breakpointR/
Package Downloads Report Download Stats