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GUI for limma Package with Affymetrix Microarrays

Bioconductor version: Release (3.18)

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

about.html HTML
affylmGUI Vignette PDF R Script
CustMenu.html HTML
Extracting affy and limma objects from affylmGUI files PDF
index.html HTML
windowsFocus.html HTML
Reference Manual PDF


biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version 1.76.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>=2)
Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, AnnotationDbi, BiocManager, R2HTML, xtable
System Requirements
URL http://bioinf.wehi.edu.au/affylmGUI/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affylmGUI_1.76.0.tar.gz
Windows Binary affylmGUI_1.76.0.zip
macOS Binary (x86_64) affylmGUI_1.76.0.tgz
macOS Binary (arm64) affylmGUI_1.76.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affylmGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affylmGUI
Bioc Package Browser https://code.bioconductor.org/browse/affylmGUI/
Package Short Url https://bioconductor.org/packages/affylmGUI/
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