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TileDBArray

Using TileDB as a DelayedArray Backend


Bioconductor version: Release (3.18)

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("TileDBArray")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TileDBArray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TileDBArray")
User guide HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License MIT + file LICENSE
Depends DelayedArray(>= 0.27.2)
Imports methods, Rcpp, tiledb, S4Vectors
System Requirements
URL https://github.com/LTLA/TileDBArray
Bug Reports https://github.com/LTLA/TileDBArray
See More
Suggests knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TileDBArray_1.12.0.tar.gz
Windows Binary TileDBArray_1.12.0.zip
macOS Binary (x86_64) TileDBArray_1.12.0.tgz
macOS Binary (arm64) TileDBArray_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TileDBArray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TileDBArray
Bioc Package Browser https://code.bioconductor.org/browse/TileDBArray/
Package Short Url https://bioconductor.org/packages/TileDBArray/
Package Downloads Report Download Stats