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Rmagpie

MicroArray Gene-expression-based Program In Error rate estimation


Bioconductor version: Release (3.18)

Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.

Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu

Maintainer: Camille Maumet <Rmagpie at gmail.com>

Citation (from within R, enter citation("Rmagpie")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rmagpie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rmagpie")
Rmagpie Examples PDF R Script
Reference Manual PDF

Details

biocViews Classification, Microarray, Software
Version 1.58.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 3)
Depends R (>= 2.6.1), Biobase(>= 2.5.5)
Imports Biobase(>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils
System Requirements
URL http://www.bioconductor.org/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rmagpie_1.58.0.tar.gz
Windows Binary Rmagpie_1.58.0.zip
macOS Binary (x86_64) Rmagpie_1.58.0.tgz
macOS Binary (arm64) Rmagpie_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rmagpie
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rmagpie
Bioc Package Browser https://code.bioconductor.org/browse/Rmagpie/
Package Short Url https://bioconductor.org/packages/Rmagpie/
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