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Plot Gene Ontology and KEGG pathway Annotation and Abundance

Bioconductor version: Release (3.18)

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Citation (from within R, enter citation("PloGO2")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

PloGO2_vignette.pdf PDF R Script
PloGO2_with_WGNCA_vignette.pdf PDF R Script
Reference Manual PDF


biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-2
Depends R (>= 4.0), GO.db, GOstats
Imports lattice, httr, openxlsx, xtable
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PloGO2_1.14.0.tar.gz
Windows Binary PloGO2_1.14.0.zip
macOS Binary (x86_64) PloGO2_1.14.0.tgz
macOS Binary (arm64) PloGO2_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PloGO2
Bioc Package Browser https://code.bioconductor.org/browse/PloGO2/
Package Short Url https://bioconductor.org/packages/PloGO2/
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