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PROPER

PROspective Power Evaluation for RNAseq


Bioconductor version: Release (3.18)

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

Author: Hao Wu

Maintainer: Hao Wu <hao.wu at emory.edu>

Citation (from within R, enter citation("PROPER")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PROPER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPER")
Power and Sample size analysis for gene expression from RNA-seq PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL
Depends R (>= 3.3)
Imports edgeR
System Requirements
URL
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Suggests BiocStyle, DESeq2, DSS, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PROPER_1.34.0.tar.gz
Windows Binary PROPER_1.34.0.zip
macOS Binary (x86_64) PROPER_1.34.0.tgz
macOS Binary (arm64) PROPER_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PROPER
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PROPER
Bioc Package Browser https://code.bioconductor.org/browse/PROPER/
Package Short Url https://bioconductor.org/packages/PROPER/
Package Downloads Report Download Stats