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MethylSeekR

Segmentation of Bis-seq data


Bioconductor version: Release (3.18)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Citation (from within R, enter citation("MethylSeekR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")
MethylSeekR PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.42.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
System Requirements
URL
See More
Suggests BSgenome.Hsapiens.UCSC.hg18
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me methylPipe, RnBeads
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeekR_1.42.0.tar.gz
Windows Binary MethylSeekR_1.42.0.zip
macOS Binary (x86_64) MethylSeekR_1.42.0.tgz
macOS Binary (arm64) MethylSeekR_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MethylSeekR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethylSeekR
Bioc Package Browser https://code.bioconductor.org/browse/MethylSeekR/
Package Short Url https://bioconductor.org/packages/MethylSeekR/
Package Downloads Report Download Stats