Welcome to the new bioconductor.org!

GEOexplorer

GEOexplorer: a webserver for gene expression analysis and visualisation


Bioconductor version: Release (3.18)

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Author: Guy Hunt [aut, cre] , Rafael Henkin [ctb, ths] , Alfredo Iacoangeli [ctb, ths] , Fabrizio Smeraldi [ctb, ths] , Michael Barnes [ctb, ths]

Maintainer: Guy Hunt <guy.hunt at kcl.ac.uk>

Citation (from within R, enter citation("GEOexplorer")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOexplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOexplorer")
GEOexplorer HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3
Depends shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0)
Imports DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car
System Requirements
URL https://github.com/guypwhunt/GEOexplorer/
Bug Reports https://github.com/guypwhunt/GEOexplorer/issues
See More
Suggests rmarkdown, usethis, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GEOexplorer_1.8.0.tar.gz
Windows Binary GEOexplorer_1.8.0.zip (64-bit only)
macOS Binary (x86_64) GEOexplorer_1.8.0.tgz
macOS Binary (arm64) GEOexplorer_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GEOexplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GEOexplorer
Bioc Package Browser https://code.bioconductor.org/browse/GEOexplorer/
Package Short Url https://bioconductor.org/packages/GEOexplorer/
Package Downloads Report Download Stats