DOI: 10.18129/B9.bioc.EnhancedVolcano    

Publication-ready volcano plots with enhanced colouring and labeling

Bioconductor version: Release (3.11)

Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.

Author: Kevin Blighe [aut, cre], Sharmila Rana [aut, ctb], Myles Lewis [aut, ctb]

Maintainer: Kevin Blighe <kevin at clinicalbioinformatics.co.uk>

Citation (from within R, enter citation("EnhancedVolcano")):


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biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 3.8 (R-3.5) (2 years)
License GPL-3
Depends R (>= 3.5.0), ggplot2, ggrepel
Suggests RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway, gridExtra, magrittr
URL https://github.com/kevinblighe/EnhancedVolcano
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Source Package EnhancedVolcano_1.6.0.tar.gz
Windows Binary EnhancedVolcano_1.6.0.zip
macOS 10.13 (High Sierra) EnhancedVolcano_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnhancedVolcano
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnhancedVolcano
Package Short Url https://bioconductor.org/packages/EnhancedVolcano/
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