EnMCB

DOI: 10.18129/B9.bioc.EnMCB    

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: Release (3.11)

Creation of the correlated blocks using DNA methylation profiles. A stacked ensemble of machine learning models, which combined the support vector machine and elastic-net regression model, can be constructed to predict disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Citation (from within R, enter citation("EnMCB")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")

 

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PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version 1.0.11
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License GPL-2
Depends R (>= 4.0)
Imports foreach, doParallel, parallel, stats, survivalROC, glmnet, survivalsvm, ggplot2, minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, survival, utils
LinkingTo
Suggests SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, prognosticROC
SystemRequirements
Enhances
URL
BugReports https://github.com/whirlsyu/EnMCB/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnMCB_1.0.11.tar.gz
Windows Binary EnMCB_1.0.11.zip
macOS 10.13 (High Sierra) EnMCB_1.0.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnMCB
Package Short Url https://bioconductor.org/packages/EnMCB/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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