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DEFormats

Differential gene expression data formats converter


Bioconductor version: Release (3.18)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("DEFormats")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")
Differential gene expression data formats converter HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends
Imports checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
System Requirements
URL https://github.com/aoles/DEFormats
Bug Reports https://github.com/aoles/DEFormats/issues
See More
Suggests BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me regionReport
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEFormats_1.30.0.tar.gz
Windows Binary DEFormats_1.30.0.zip
macOS Binary (x86_64) DEFormats_1.30.0.tgz
macOS Binary (arm64) DEFormats_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEFormats
Bioc Package Browser https://code.bioconductor.org/browse/DEFormats/
Package Short Url https://bioconductor.org/packages/DEFormats/
Package Downloads Report Download Stats