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ConsensusClusterPlus

ConsensusClusterPlus


Bioconductor version: Release (3.18)

algorithm for determining cluster count and membership by stability evidence in unsupervised analysis

Author: Matt Wilkerson <mdwilkerson at outlook.com>, Peter Waltman <waltman at soe.ucsc.edu>

Maintainer: Matt Wilkerson <mdwilkerson at outlook.com>

Citation (from within R, enter citation("ConsensusClusterPlus")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ConsensusClusterPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ConsensusClusterPlus")
ConsensusClusterPlus Tutorial PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Software
Version 1.66.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL version 2
Depends
Imports Biobase, ALL, graphics, stats, utils, cluster
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me CancerSubtypes, CATALYST, ChromSCape, DEGreport, DeSousa2013, FlowSOM, PDATK
Suggests Me TCGAbiolinks
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ConsensusClusterPlus_1.66.0.tar.gz
Windows Binary ConsensusClusterPlus_1.66.0.zip
macOS Binary (x86_64) ConsensusClusterPlus_1.66.0.tgz
macOS Binary (arm64) ConsensusClusterPlus_1.66.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ConsensusClusterPlus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ConsensusClusterPlus
Bioc Package Browser https://code.bioconductor.org/browse/ConsensusClusterPlus/
Package Short Url https://bioconductor.org/packages/ConsensusClusterPlus/
Package Downloads Report Download Stats