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CGHbase

CGHbase: Base functions and classes for arrayCGH data analysis.


Bioconductor version: Release (3.18)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CopyNumberVariation, Infrastructure, Microarray, Software
Version 1.62.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License GPL
Depends R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
System Requirements
URL https://github.com/tgac-vumc/CGHbase
Bug Reports https://github.com/tgac-vumc/CGHbase/issues
See More
Suggests
Linking To
Enhances
Depends On Me CGHcall, CGHnormaliter, CGHregions, GeneBreak
Imports Me CGHnormaliter, QDNAseq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGHbase_1.62.0.tar.gz
Windows Binary CGHbase_1.62.0.zip
macOS Binary (x86_64) CGHbase_1.62.0.tgz
macOS Binary (arm64) CGHbase_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGHbase
Bioc Package Browser https://code.bioconductor.org/browse/CGHbase/
Package Short Url https://bioconductor.org/packages/CGHbase/
Package Downloads Report Download Stats