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ASpli

Analysis of Alternative Splicing Using RNA-Seq


Bioconductor version: Release (3.18)

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Ariel Chernomoretz <algo107 at gmail.com>

Citation (from within R, enter citation("ASpli")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")
ASpli PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version 2.12.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL
Depends methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASpli_2.12.0.tar.gz
Windows Binary ASpli_2.12.0.zip
macOS Binary (x86_64) ASpli_2.12.0.tgz
macOS Binary (arm64) ASpli_2.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASpli
Bioc Package Browser https://code.bioconductor.org/browse/ASpli/
Package Short Url https://bioconductor.org/packages/ASpli/
Package Downloads Report Download Stats