gespeR

DOI: 10.18129/B9.bioc.gespeR  

This is the development version of gespeR; for the stable release version, see gespeR.

Gene-Specific Phenotype EstimatoR

Bioconductor version: Development (3.18)

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gespeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CellBasedAssays, GeneTarget, ImmunoOncology, Preprocessing, Regression, Software, Visualization
Version	1.33.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	GPL-3
Depends	methods, graphics, ggplot2, R (>= 2.10)
Imports	Matrix, glmnet, cellHTS2, Biobase, biomaRt, doParallel, parallel, foreach, reshape2, dplyr
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL	http://www.cbg.ethz.ch/software/gespeR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	gespeR_1.33.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gespeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gespeR
Bioc Package Browser	https://code.bioconductor.org/browse/gespeR/
Package Short Url	https://bioconductor.org/packages/gespeR/
Package Downloads Report	Download Stats