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GOSim

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of GOSim; for the stable release version, see GOSim.

Computation of functional similarities between GO terms and gene products; GO enrichment analysis


Bioconductor version: Development (3.19)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Clustering, GO, Pathways, Software
Version 1.41.1
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
System Requirements
URL
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Suggests
Linking To Rcpp
Enhances igraph
Depends On Me
Imports Me
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Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary GOSim_1.41.1.zip (64-bit only)
macOS Binary (x86_64) GOSim_1.41.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Package Short Url https://bioconductor.org/packages/GOSim/
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