To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HD2013SGI")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
Author: Bernd Fischer
Maintainer: Bernd Fischer <b.fischer at dkfz.de>
Citation (from within R,
enter citation("HD2013SGI")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HD2013SGI")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HD2013SGI")
R Script | HD2013SGI | |
Reference Manual |
biocViews | CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData |
Version | 1.14.0 |
License | Artistic-2.0 |
Depends | R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage |
Imports | |
LinkingTo | |
Suggests | BiocStyle |
SystemRequirements | GNU make |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | HD2013SGI_1.14.0.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/HD2013SGI/ |
Package Downloads Report | Download Stats |
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