To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("variancePartition")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables.
Author: Gabriel E. Hoffman
Maintainer: Gabriel E. Hoffman <gabriel.hoffman at mssm.edu>
Citation (from within R,
enter citation("variancePartition")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("variancePartition")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("variancePartition")
R Script | 1) Tutorial on using variancePartition | |
R Script | 2) Additional visualizations | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, RNASeq, Regression, Software |
Version | 1.4.2 |
In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
License | GPL (>= 2) |
Depends | ggplot2, foreach, Biobase, methods |
Imports | MASS, pbkrtest (>= 0.4-4), iterators, splines, colorRamps, gplots, reshape2, lme4 (>= 1.1-10), doParallel, limma, grDevices, graphics, utils, stats |
LinkingTo | |
Suggests | edgeR, dendextend, tximport, tximportData, ballgown, DESeq2, readr, knitr, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | variancePartition_1.4.2.tar.gz |
Windows Binary | variancePartition_1.4.2.zip |
Mac OS X 10.9 (Mavericks) | variancePartition_1.4.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/variancePartition/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/variancePartition/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: