To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("debrowser")

In most cases, you don't need to download the package archive at all.

debrowser

debrowser: Interactive Differential Expresion Analysis Browser

Bioconductor version: Release (3.4)

Bioinformatics platform containing interactive plots and tables for differential gene and region expression studies. Allows visualizing expression data much more deeply in an interactive and faster way. By changing the parameters, users can easily discover different parts of the data that like never have been done before. Manually creating and looking these plots takes time. With DEBrowser users can prepare plots without writing any code. Differential expression, PCA and clustering analysis are made on site and the results are shown in various plots such as scatter, bar, box, volcano, ma plots and Heatmaps.

Author: Alper Kucukural <alper.kucukural at umassmed.edu>, Manuel Garber <manuel.garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Citation (from within R, enter citation("debrowser")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("debrowser")

Documentation

HTML	R Script	DEBrowser Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ChIPSeq, Clustering, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version	1.3.11
In Bioconductor since	BioC 3.3 (R-3.3) (1 year)
License	GPL-3 + file LICENSE
Depends	R (>= 3.3.0), shiny, ggvis, jsonlite, shinyjs
Imports	DT, ggplot2, RColorBrewer, annotate, gplots, AnnotationDbi, DESeq2, DOSE, igraph, grDevices, graphics, stats, utils, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, stringi, reshape2, baySeq, d3heatmap, org.Hs.eg.db, org.Mm.eg.db, limma, edgeR, clusterProfiler, V8, methods, sva, shinydashboard, devtools, RCurl
LinkingTo
Suggests	testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL	https://github.com/UMMS-Biocore/debrowser
BugReports	https://github.com/UMMS-Biocore/debrowser/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	debrowser_1.3.11.tar.gz
Windows Binary	debrowser_1.3.11.zip
Mac OS X 10.9 (Mavericks)	debrowser_1.3.11.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/debrowser/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/debrowser/
Package Downloads Report	Download Stats

Documentation »

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